PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030328
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 713aa    MW: 79308.6 Da    PI: 6.1967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030328genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-07117139427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ff++ G+C  Gd C+F+Hgp
  DCAR_030328 117 VPCIFFQK-GYCLKGDMCPFMHGP 139
                  79******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.0522453IPR000571Zinc finger, CCCH-type
PfamPF156634.0E-112579No hitNo description
SMARTSM003560.0122552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.3385581IPR000571Zinc finger, CCCH-type
SMARTSM003560.00365580IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774113140IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6114139IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6115138IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4116139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4117139IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MLGVKQNEEK EGPPHQITAE EEALKRNTDC VYFLASPLTC KKGIECEYRH SDIARLNPQD  60
CYFWLNGNCL NPKCAFRHPP LDGLLGTQVT TSLNLPPSHT MVPVSSQGLN VPGKQSVPCI  120
FFQKGYCLKG DMCPFMHGPY SLNNKATQSA GATPVPESQP NKKTFGGGLG NHTQVQKLSQ  180
GNAPKSANLP TQEKSADVLA KVPLRNRIST GRSASIATGL DNELPQYRPG NVHSFSNGNL  240
VSRSNRNHQV HIVEDQSVSN VKDADEVSRE LSPGFDVLVD DELRDSEYYP DEDQFGRSTG  300
HNGMNLNASN EYENKRSGDY GPVADVDRDL YDKRNYDSFE RLQGHSGRDV QRSSERVLGG  360
PAYTHRRRYP RADSPGQING SDLRHHLAKQ KRNTGLRSII SRDRTLLNSA DDRSFQAPRR  420
DLLPTHDTMV SSRLQGRIKL PGRSASPIPP LSENEIDRAR NRSRLSAERP LGRLRDRIKG  480
RVQEDFINDR NFRGSRIRRD IVDDNNAAFS GPKSLSELKV AKTSEIYEKH PSERMSHGKR  540
KYQKLEEGQL GEGDVSFEGP MPLSEILKRK RGGNVVSQES GSTTAEEHNQ MEIKQHLMIP  600
TEAKESNDVL FSAAKNEGSI PAAGKVVVTE GNNKLHEGQP SLQRSTSELQ IEDGMIGDEA  660
FDQKGDDFDY DEQADGKDYN LDDVENGDPE DDYFDEDDDA DDFAKKMGVV FS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220996.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A061EFX70.0A0A061EFX7_THECC; CCCH-type zinc finger family protein, putative
STRINGVIT_01s0010g01770.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633